SULI
CCI
PST
FaST

Student Abstracts at LLNL:

An Analysis of Chlorine Gas Release. KARA BROWN (University of California San Diego, La Jolla, CA, 92092) GEORGE FULTON (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Chlorine is an extremely reactive and harmful gas that can cause a myriad of health problems within seconds of exposure. This report is an analysis of current chlorine safety regulations in place at Lawrence Livermore National Laboratory for Building 153. It was found that the rapidity at which usable amounts of chlorine gas could be released into the main workspace of the building that the emergency response alarm for a leak needed to remain active. The calculations go through a series of different possibilities including the concentration of chlorine gas with multiple size cylinders, the difference that ventilation makes, and the amount of time it would take the ventilation to get the concentration of chlorine gas down to different airborne exposure standards such as the IDLH, STEL, 8-Hour TLV, or Mean Odor Threshold.

Analysis of Sharps Safety Procedures and Injury Prevention Methods at Lawrence Livermore National Laboratory. NICOLE SADLER (University of California, Davis, CA, 95616) LESLIE HOFHERR (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Today’s hazardous world demands safe work practices. An employee’s risk of injury and infection increases significantly when he handles sharps. To assess sharps use and compliance with correct safety controls and practices, the author generated a survey form. This form was based on current safety standards and used to conduct face-to-face interviews of Lawrence Livermore National Laboratory (LLNL) personnel who were using biological materials and sharps in research projects. At LLNL, current safety standards are summarized in what is known as the Environmental Safety and Health (ES&H) Manual. Close scrutinization of the ES&H manual confirmed consistency with the current sharps use standards. The Occupational Safety & Health Administration (OSHA) Bloodborne Pathogens Standard mandates that employers maintain a sharps injury log. The survey was designed to determine if any discrepancies between the number of sharps injuries sustained and those reported existed. However, the LLNL sharps injury log was not currently available but will be available in the future, and therefore such comparisons were not performed as part of this analysis. Twenty percent of the facilities using sharps at LLNL were evaluated. During the assessments, almost sixty percent of the labs had an observable sharps safety hazard. These safety breaches fell into one of the following three categories: improper recapping technique, presence of an exposed or improperly discarded sharp, or overfilled sharps container. Nearly twenty percent of the individuals interviewed either had injured himself with a sharp or knew of someone affiliated with his particular lab that had been injured. Seventy-five percent of the reported injuries occurred in a BSL-2 lab. Most researchers at LLNL use scalpels and needles. Half of the researchers reuse their sharps, a practice that should be avoided. The statistical results of the surveys alerted safety personnel to the need for sharps training and further evaluation of sharps use at LLNL.

Analyzing the Structure and Function of Novel Cytochromes from a Natural Microbial Community. ANNA SIEBERS (University of California, San Diego, La Jolla, CA, 92093) MICHAEL P. THELEN (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

The Richmond mine in Iron Mountain, California, provides an unusual ecosystem suitable for the growth of microbial biofilms which produce many unique proteins. Through iron oxidation, these proteins facilitate acid mine drainage (AMD). Because this habitat is extremely acidic, survival is an extraordinary feat and the process of environmental selection is rare. In order to understand the mechanisms by which these organisms oxidize iron and gain electrons for energy, biochemical studies were applied. More specifically, column chromatography, spectrophotometry, and gel electrophoresis were used to determine the proteins present in different biofilms. Two specific locations of the mine researched were the AB drift and Ultraback C (UBC), which were both found to contain at least five different types of protein and a large amount of heme-bound cytochromes. Another application of these methods was to investigate proteins playing a major role within the community; one protein selected was cytochrome 579 (Cyt579) due to its abundance in the biofilm, iron oxidizing potential, and signature absorbance of 579nm. The structure and function of Cyt579 could be characterized by the isolation of its heme, which was completed using column chromatography; however, one of the challenges has been liberating the heme from the column. Further research, including acid-base and temperature profiling of Cyt579 should help elucidate its structural changes within alternate environments and metabolism within the community.

Development of Optical Trapping Raman and Coherent Anti-Stokes Raman Scattering (CARS) Spectroscopy for Analysis of Phospholipid Vesicles. DANIEL AUTREY (Fayetteville State University, Fayetteville, MC, 28301) DR. JAMES W. CHAN (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Raman spectroscopy is a powerful technique that is being applied to the study of biological systems in our laboratory. Raman spectroscopy is a laser-based method of chemical analysis that generates vibrational signal from molecular bonds. There are two overall goals of this project. The first aim is to obtain the spontaneous Raman signatures of individual optically-trapped phospholipid vesicles. Two types of phospholipids are analyzed in this experiment, 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) and 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC). Single 0.4 µm diameter phospholipid vesicles are successfully trapped in a laser-trapping Raman system and their spectral signatures simultaneously acquired. Additional experiments were carried out to determine the vibrational modes of DPPC that are sensitive to the gel-liquid crystal phase transition occurring at 41°C. Characterization of the DPPC phospholipids in the liquid crystal state is important to understanding the permeability of the lipid membrane. After the phase transition, a noticeable slight shift in the CH2 deformation mode from 1462 cm-1 to 1458 cm-1 occurs which may be explained by a weakening of the dispersion forces between neighboring phospholipids, allowing the CH2 groups to vibrate more freely. The second aim of this project is to develop a broadband coherent anti-Stokes Raman scattering (CARS) optical trapping system to enable the monitoring of rapid biological processes. To achieve this end, the laser conditions necessary to generate broadband light by the coupling of femtosecond pulsed near-infrared light into a photonic crystal fiber (PCF) was investigated.

Development of Optical Trapping Raman and Coherent Anti-Stokes Raman Scattering (CARS) Spectroscopy for Analysis of Phospholipid Vesicles. SALIMA HAMED (Fayetteville State University, Fayetteville, NC, 28301) JAMES W. CHAN (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Raman spectroscopy is a powerful technique that is being applied to the study of biological systems in our lab. Raman spectroscopy is a laser-based method of chemical analysis that generates vibrational signal from molecular bonds. There are two overall goals of this project. The first aim is to obtain the spontaneous Raman signatures of individual optically-trapped phospholid vesicles. Two types of lipids are analyzed in this experiment, 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) and (DMPC). Single 0.4 µm diameter lipid vesicles are successfully trapped in a laser trapping Raman system and their spectral signatures simultaneously acquired. Additional experiments were carried out to determine the vibrational modes of DPPC that are sensitive to the gel-liquid crystal phase transition occurring at 41°C. Characterization of the DPPC phospholipids in the liquid crystal state is important to understanding the permeability of the lipid membrane. After the phase transition, a noticeable slight shift in the CH2 deformation mode from 1462 cm-1 to 1458 cm-1 occurs which may be explained by a weakening of the dispersion forces between neighboring phospholipids, allowing the CH2 groups to vibrate more freely. The second aim of this project is to develop a broadband coherent anti-Stokes Raman scattering (CARS) optical trapping system to enable monitoring rapid biological processes. To achieve this end, the laser conditions necessary to generate broadband light by the coupling of femtosecond pulsed near-infrared light into a photonic crystal fiber (PCF) were investigated.

Development of Optical Trapping Raman and Coherent Anti-Stokes Raman Scattering (CARS) Spectroscopy for Analysis of Phospholipid Vesicles. BETHANY WEISS (Fayetteville State University, Fayetteville, NC, 28301) DR. JAMES W. CHAN (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Raman spectroscopy is a powerful technique that is being applied to the study of biological systems in our lab. Raman spectroscopy is a laser-based method of chemical analysis that generate vibrational signal from molecular bonds. There are two overall goals of this project. The first aim is to obtain the spontaneous Raman signatures of individual optically-trapped phospholid vesicles. Two types of lipids are analyzed in this experiment, 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) and 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC). Single 0.4 µm diameter lipid vesicles are successfully trapped in a laser trapping Raman system and their spectral signatures simultaneously acquired. Additional experiments were carried out to determine the vibrational modes of DPPC that are sensitive to the gel-liquid crystal phase transition occurring at 41°C. Characterization of the DPPC phospholipids in the liquid crystal state is important to understanding the permeability of the lipid membrane. After the phase transition, a noticeable slight shift in the CH2 deformation mode from 1462 cm-1 to 1458 cm-1 occurs which may be explained by a weakening of the dispersion forces between neighboring phospholipids, allowing the CH2 groups to vibrate more freely. The second aim of this project is to develop a broadband coherent anti-Stokes Raman scattering (CARS) optical trapping system to enable monitoring rapid biological processes. To achieve this end, the laser conditions necessary to generate broadband light by the coupling of femtosecond pulsed near-infrared light into a photonic crystal fiber (PCF) was investigated.

Generation of Theoretical Spectra for Hot Dense Matter. AJIT HIRA (Northern New Mexico Community College, Espanola, NM, 87532) DR. RICHARD W. LEE (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Tritium will be used as a fuel for the NIF ignition experiments. Understanding its behavior in various materials is important to evaluate inventory and to develop safety plans for handling tritiated hardware. Since tritium monitors will be used for evaluating airborne tritium concentration, the response of tritium monitor, an ion chamber, was calculated as a function of distance from the center of the chamber to the source location. A Cs-137 gamma check source was used to determine the experimental response of the meter as a function of distance from the center of the chamber. Cs-137 emits beta radiation (95% - 0.514 MeV, and 5% - 1.18 MeV; with 0.661 MeV gammas). Its half-life is about 30.07 years. By correlating a simple relationship between the tritium energy deposition and gamma energy deposit in the chamber volume, an external gamma source can be used to both check the response and calibrate the meter precisely. Also had a brief opportunity to study the radiation dose-response relationship, primarily for acute doses, for various species as function of DNA content, number of chromosomes, body mass, etc. Some discussions were held in the areas of radiobiology and nuclear medicine.

Generation of Theoretical Spectra for Hot Dense Matter. ELIAS ALLISON, MATILDA FERNANDEZ, & AJIT HIRA (Northern New Mexico Community College, Espanola, NM, 87532) DR. RICHARD W. LEE (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

The focus of this project is to use computer codes to generate spectroscopic for data plasmas and for hot dense matter, and to use these theoretical spectra to interpret experimental results. These theoretical spectra are important because of their applications in the study of ionized matter and magnetic fields near the surfaces of the sun and stars, the origin of cosmic rays, the dispersion and broadening of signals traveling through interstellar space, the realization of controlled release of nuclear fusion energy, and the development of new electronic devices, among others. The computer codes model specified interactions for elements ranging from Helium to Iron, with a particular interest in lithium-like, helium-like and hydrogenic ionic species. Some of the important events included in the model are collisional ionization and recombination, radiative, bound-free processes, bound-bound processes, auto-ionization and electron capture. At present the focus of the project is the design and implementation of a good dynamic interface to improve the use of existing codes.

MEMS Optical Force Probe. KEVIN LIN (University of California, Berkeley, Berkeley, CA, 94720) JACK KOTOVSKY (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

This work seeks to design small and tunable optical force probes to measure compressive loads. As the sensor will be placed between two surfaces, a major goal is to minimize the thickness of the sensor. Optical sensors based on fiber optic and Micro-electro-mechanical systems (MEMS) technology allow for small, versatile, and accurate sensors. These sensors do not use electricity, and offer numerous advantages over traditional sensors. Fiber Bragg Gratings (FBGs) are treated fibers that have a periodically varying index of refraction to give a distinct reflection and transmission spectrum. This spectrum is dependent on strain, caused either by a transducer attached to the fiber or thermal expansion. A challenge of this work is to create a MEMS structure that transduces transverse loads to fiber strain while compensating for thermal expansion. The limitations of silicon and the size of the device introduce many challenges. Finite Element Analysis (FEA) simulates the mechanical and thermal behavior of the MEMS transducer and its micro-beams to determine a suitable geometry (i.e. angle, length, and height). Various metal coatings, solders, and soldering techniques are examined to determine a repeatable and reliable method for sensor assembly. Groove cross-sections are optimized for superior fiber to silicon bonding. Novel schemes assist in the alignment and assembly of the sensor. An optical force sensor using FBGs has been designed with a total thickness of 140um (similar in thickness to a fiber optic cable), insignificant thermal sensitivity, tuneability to different applied pressures, and mass manufacturability. Its fabrication is currently underway.

Mobile Data Collection Applications: A Proof of Concept. JONATHAN CHANG (University of California, Berkeley, Berkeley, CA, 94720) TIM LOWE (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

This project’s goal is to provide a proof of concept for mobile data collection applications, and identify the best ways such applications could be implemented and used. Such an application should decrease the time and resources users now need to devote to redundant data processes, and provide an easy of locating and retrieving data at a later time. The two types of available mobile devices, Personal Digital Assistants and Tablet Personal Computers, each have their particular strengths that suggest themselves for certain types of applications. As such, parallel data collection applications have been developed, with a common web application for uploading information to the database. While these aspects have been developed and proven, it still remains to refine these applications, develop the tables to hold their data, and field-test with users for their feedback.

Overexpression of human SOST in transgenic mice results in defective patterning of limb cartilage elements. LEILA BEACH (Stanford University, Stanford, CA, 94305) GABRIELA G. LOOTS (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Sclerosteosis is a generalized progressive bone overgrowth disorder due to the loss of function of the SOST gene product sclerostin. Null mutations in SOST result in occasional polydactyly and syndactyly along with a substantial progressive increase in bone density. Accumulation of abnormal bone mass begins in late childhood and affected patients display increased bone formation, while bone resorption is undisturbed. SOST is expressed in osteocytes, the mature metabolic cells in ossified bone. To investigate the physiological function of the SOST protein, we have generated several lines of transgenic mice carrying a ~160kb human SOST bacterial artificial chromosome or BAC. Transgenic mice overexpressing SOST (hSOSTwt) exhibit a decrease in bone mineral density in the appendicular and axial skeleton when compared to non-transgenics from four to six months of age as evaluated by Dual Energy X-ray Absortiometry (DEXA) and quantitative computed tomography pQCT. When bred to homozygosity (hSOSTwt/wt) these animals also show congenital limb defects. Hereditary hand malformations occur frequently in human populations, therefore these animals can serve as a model for understanding molecular perturbations that lead to improper limb patterning. The fore- and hind-limbs of these animals are severely deformed displaying a wide range of fused and missing digits as visualized by autoradiography and pQCT. Since limb development is initiated prior to ossification of the skeleton, we find SOST to be expressed in the developing embryo as early as embryonic day 9 (E9), predominantly in the mesenchyme tissue of the developing limb bud. We have performed a detailed phenotypic analysis of these transgenic embryos using skeletal preparations and histology which revealed a defect in cartilage formation. To investigate whether the limb defect stems from defective chondrocyte differentiation, proliferation, or apoptosis we set out to examine limb sections by in situ hybridization. We identified cDNA clones to generate antisense RNA probes for Fgfr1 (expressed in distal proliferating chondrocytes), Bmp7 (columnar proliferating), Fst and Tgfß2 (early hypertrophic), Bmp2, and Tgfß3 (hypertrophic cells), and Spp1 (terminal hypertrophic). These markers represent distinct stages in the chondrocyte differentiation program, and misexpression of these markers revealed by in situ hybridization will indicate cell types that may show excessive proliferation or apoptosis.

Policy Analysis: Rapid Response Vaccine Development for Emerging and Emergent Infectious Diseases. CATHERINE COLAIANNI (Duke University, Durham, NC, 27708) THOMAS BATES (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Despite billions of dollars spent in research and development, the U.S. is alarmingly under-prepared to defend against biological warfare. This is most notable when considering the availability of biodefense vaccines. Vaccine production facilities are disappearing, and the production methodology employed in most cases is slow, expensive and outdated. Additionally, there is no comprehensive capability or even a strategy to develop and produce vaccines rapidly as part of an emergency response to a new or emerging pathogen. To explore the current state of vaccine production and to consider possible new directions to enhance our national posture, we undertook a policy analysis starting with an in-depth review of the historical vaccine development cycle for Bacillus anthracis, including the time requirements and government funding. Next, we made simple projections for a similar path to develop vaccines for other NIAID Category A Priority pathogens. Finally, options were explored for new research and development directions (5 to 10 year timeline) to support a rapid vaccine development process amenable to emergency use. The long-term solution was assessed to be an end-to-end "pipeline approach" whereby either synthetic subunit or attenuated vaccines could be rapidly produced 'on-demand'; however, considerable research is still required for methods to rapidly identify virulence factors and antigenic regions.

Qualitative Testing of Social Network Analysis Biowarfare Taxonomy: An Analysis of LLNL Open Source Publications. LIRAN GOLDMAN (University of California, San Diego, La Jolla, CA, 92093) DEBORAH YARSIKE BALL AND DALE K. BREARCLIFFE (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

The Dynamic Network Engineering Group takes a network-centric approach to discover and characterize organizational expertise and relationships of state and non-state actors intent on creating and using weapons of mass destruction (WMD). This approach utilizes a taxonomy that can identify and extract key actors from large, unstructured data sources. In this project, a taxonomy was developed and tested on a known entity: Lawrence Livermore National Laboratory (LLNL). The goal was to discover and qualitatively describe the results of a specific taxonomy when combined with the dynamic network analysis methods. The data used in this test analysis include a list of Livermore Laboratory employees who have a pager assigned to them, online versions of LLNL’s Science & Technology Review (S&TR), and a potential biowarfare taxonomy. After the S&TR issues were downloaded, the data were uploaded and processed in Automap, a program capable of extracting and analyzing computer based text by creating links among words then constructing a network. Next, the words of interest were extracted from the S&TR articles, and evaluated in Organization Risk Analyzer (ORA), a program capable of statistically analyzing dynamic networks. The analysis completed by ORA on this dataset revealed some key findings: the years 2003 and 2004 were prominent for biology related publications. Also, pathogens and anthrax were consistently the top areas explored. Follow-up analysis of these results indicates that this process is successful at singling out pertinent actors, but the results should be viewed with caution. A few drawbacks include Automap’s failure to extract variations of words the program is instructed to locate. Additionally, not all of the relationships established by Automap are valid due to its inability to distinguish between unrelated, yet adjacent articles. Furthermore, reporters who wrote the publications used in this test case became part of the data set. Also, the inclusion of projects and people is not a complete representation of ongoing research at LLNL. This latter issue is somewhat mitigated when examining external organizational expertise and relationships because the publications assessed are usually authored by the researchers themselves. These matters will be considered when applying this process to other datasets.

Regional Assessment of CO 2 Sources and Sinks for the Indian Subcontinent. YOLANDA PRICE (Central State University, Wilberforce, Oh, 0) JULIO FRIEDMANN (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Carbon dioxide (CO 2) is the primary anthropogenic greenhouse gas. Developing countries are expected to substantially add to future greenhouse gas emissions. In particular, India’s CO2 emissions are expected to increase 70% by 2025. Geologic carbon capture and storage (CCS) offers a way to reduce CO 2 emissions. Our study used GIS to answer two questions. 1. Where are the major CO2 sources, sinks and risks in South Asia? 2. Where should geologic CO 2 sequestration efforts be focused in South Asia? To improve this assessment we augmented the International Energy Agency’s GHG database for South Asia by locating 1/3 of the region’s large stationary CO2 sources with emissions > 0.1 MM t CO2/y.

The Efficacy of the National Ignitions Facility's Ergonomic Program. NAOMI SHAH (University of California San Diego, La Jolla, CA, 92092) STEVEN MCCONNELL (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Ergonomic injuries have become an increasing concern for office workers and their employers due to the rise in computer-based work. These injuries, as with all chronic injuries, are most prevalent in the older members of the work force due to a longer exposure to chronic insults to their bodies. In 2005, over half of the recorded illness/injury cases at the National Ignitions Facility (NIF) at Lawrence Livermore National Laboratory (LLNL) were ergonomic cases. In order to reduce the number of such cases and their associated costs, NIF has implemented an ergonomic program in which the goal is to evaluate their 1,200 employees. The current process of creating a list of employees who need an evaluation, making an appointment with the employees, performing the evaluation, and following up afterwards proved to have some problems which inhibit efficiency. To enhance the process of forming a list of employees for evaluations, a new database has been developed and is being tested. This allows the evaluator to receive daily updated lists. In order to easily set up appointments and yield a larger response rate, it was found that a Meeting Maker proposal followed by an Email works the best. The evaluator uses the NIF Comfort Survey to help asses the employee’s work space; this survey proves to be sufficient in identifying the needs of the employee. Overall, the ergonomic program has made a good start in preventing further ergonomic injuries, and with implementation of the new recommendations, will prove to be an efficacious program.

The Laboratory Assessment Worksheet—A Risk Comparison of Biological and Chemical Hazards in the Laboratory. REBECCA WILLIAMSON (University of Virginia, Charlottesville, VA, 22556) GERALD SCHWEICKERT (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Today’s hazardous world demands safe work practices. An employee’s risk of injury and infection increases significantly when he handles sharps. To assess sharps use and compliance with correct safety controls and practices, the author generated a survey form. This form was based on current safety standards and used to conduct face-to-face interviews of Lawrence Livermore National Laboratory (LLNL) personnel who were using biological materials and sharps in research projects. At LLNL, current safety standards are summarized in what is known as the Environmental Safety and Health (ES&H) Manual. Close scrutinization of the ES&H manual confirmed consistency with the current sharps use standards. The Occupational Safety & Health Administration (OSHA) Bloodborne Pathogens Standard mandates that employers maintain a sharps injury log. The survey was designed to determine if any discrepancies between the number of sharps injuries sustained and those reported existed. However, the LLNL sharps injury log was not currently available but will be available in the future, and therefore such comparisons were not performed as part of this analysis. Twenty percent of the facilities using sharps at LLNL were evaluated. During the assessments, almost sixty percent of the labs had an observable sharps safety hazard. These safety breaches fell into one of the following three categories: improper recapping technique, presence of an exposed or improperly discarded sharp, or overfilled sharps container. Nearly twenty percent of the individuals interviewed either had injured himself with a sharp or knew of someone affiliated with his particular lab that had been injured. Seventy-five percent of the reported injuries occurred in a BSL-2 lab. Most researchers at LLNL use scalpels and needles. Half of the researchers reuse their sharps, a practice that should be avoided. The statistical results of the surveys alerted safety personnel to the need for sharps training and further evaluation of sharps use at LLNL.

Tritium diffusivity in metals; response of a tritium monitor to Cs-137 gammas; dose-response relationship function of species mass, DNA content and chromosomes. CHRISTOPHER COPELAND (Morehouse College, Atlanta, GA, 30314) MICHAEL SINGH (Lawrence Livermore National Laboratory, Livermore, CA, 94550)

Tritium will be used as a fuel for the NIF ignition experiments. Understanding its behavior in various materials is important to evaluate inventory and to develop safety plans for handling tritiated hardware. Since tritium monitors will be used for evaluating airborne tritium concentration, the response of tritium monitor, an ion chamber, was calculated as a function of distance from the center of the chamber to the source location. A Cs-137 gamma check source was used to determine the experimental response of the meter as a function of distance from the center of the chamber. Cs-137 emits beta radiation (95% - 0.514 MeV, and 5% - 1.18 MeV; with 0.661 MeV gammas). Its half-life is about 30.07 years. By correlating a simple relationship between the tritium energy deposition and gamma energy deposit in the chamber volume, an external gamma source can be used to both check the response and calibrate the meter precisely. Also had a brief opportunity to study the radiation dose-response relationship, primarily for acute doses, for various species as function of DNA content, number of chromosomes, body mass, etc. Some discussions were held in the areas of radiobiology and nuclear medicine.